Dual Booting Pop OS and Windows: Windows Keeps Being Placed on Top in Boot Order

Abstract: Resolves Windows Boot Manager overriding Pop OS in the boot order by manually adjusting BIOS settings and disabling Fast Startup.

Created: 2026-08-22 by
To resolve Windows dominating the boot order on an ASUS system dual-booting Pop OS, you must manually adjust the firmware settings. Access the BIOS by pressing F2 or Del during startup, navigate to the Boot tab, and move GRUB to the first position using the F5/F6 keys. Save changes with F10 to ensure Pop OS loads before Windows automatically.

Understanding the Boot Priority Conflict

When installing Pop OS alongside Windows 10, the Linux installer typically installs the GRUB bootloader into the EFI System Partition (ESP). However, many modern motherboards, particularly those from ASUS, have a default behavior that prioritizes the "Windows Boot Manager" entry above other operating systems. This happens because the UEFI firmware scans for specific GUIDs associated with Microsoft’s bootloader and places them at the top of the list to ensure fast startup times for the primary OS.

This conflict is not a bug in Pop OS or Windows, but rather a feature of how UEFI handles multiple boot entries. If you do not intervene, every time you power on your machine, the system will bypass GRUB entirely and launch Windows directly. This makes it impossible to select Pop OS unless you manually interrupt the boot process or access the one-time boot menu repeatedly, which is inefficient and frustrating for daily use.

Accessing the ASUS BIOS/UEFI Settings

The first step in resolving this issue is entering the firmware interface where boot priorities are managed. Shut down your computer completely. Once the machine is off, press the power button and immediately begin tapping the F2 key repeatedly. On some ASUS models, you may need to press Delete instead. You should see the ASUS logo or a black screen with text indicating you are entering Setup mode.

If you are unable to enter BIOS using keyboard shortcuts, you can also trigger it from within Windows. Go to Settings > Update & Security > Recovery, and under Advanced startup, click Restart now. After the reboot, select Use a device and choose UEFI Firmware Settings. This will restart the PC directly into the BIOS interface. Ensure you are in the correct interface; look for tabs labeled Boot, Startup, or Advanced.

Manually Reordering Boot Entries

Once inside the BIOS, locate the Boot tab. Here you will see a list of devices and boot options. Look for an entry named Windows Boot Manager and another named ubuntu, Pop!_OS, or simply GRUB. The goal is to move the Linux entry to the very top of the priority list.

Use the arrow keys to highlight Windows Boot Manager. Press F5 or F6 (check the bottom of the screen for the specific key legend) to move it down the list. Then, highlight the ubuntu or GRUB entry and move it up until it is number one. Some newer ASUS boards use a mouse-friendly interface where you can simply drag and drop the entries. Ensure that the Linux bootloader is listed before any other Windows-related entries.

Fixing Windows Boot Order Issue in Dual Booting Pop OS and Windows provides additional context if your system lists multiple redundant entries that need cleaning.

Disabling Fast Startup in Windows

Even after changing the BIOS order, Windows can sometimes hijack the boot process again due to its "Fast Startup" feature. This hybrid shutdown state hibernates the kernel, which can lock the EFI variables or cause the firmware to reset priorities upon detecting the Windows partition. To prevent this, boot into Windows and open the Control Panel. Navigate to Hardware and Sound > Power Options.

Click Choose what the power buttons do and then click Change settings that are currently unavailable. Uncheck the box next to Turn on fast startup (recommended). Save changes and shut down the computer completely. This ensures that when you power on, the UEFI firmware performs a cold boot scan, respecting the order you set in the previous step without interference from a hibernated Windows state.

Verifying Secure Boot and Legacy Support

In some cases, mismatched security settings can cause the bootloader to be hidden or deprioritized. In the BIOS Security or Boot tab, check the status of Secure Boot. Pop OS supports Secure Boot, so it should remain enabled for maximum security. However, if you encounter issues, try toggling it off temporarily to see if the GRUB entry appears correctly in the boot list.

Additionally, ensure that CSM (Compatibility Support Module) is disabled if you installed Pop OS in UEFI mode. Mixing CSM and UEFI modes often leads to boot order confusion. If your system is set to UEFI only, make sure the Windows Boot Manager is still present in the list but placed below the Linux entry. If you have previously modified boot flags using tools like bcdedit in Windows, these changes might override BIOS settings. In such cases, resetting the NVRAM in BIOS may be necessary.

BIOS won't recognize bootloader: Troubleshooting Guide offers deeper diagnostics if your GRUB entry is missing entirely from the list.

Finalizing and Testing

After making these adjustments, press F10 to save and exit. The system will reboot. You should now see the GRUB menu appear, allowing you to choose between Pop OS and Windows. If Windows still boots automatically, re-enter the BIOS and verify that no other boot option, such as a network boot or USB drive, is interfering. Consistent ordering in the primary boot priority list is key to maintaining a stable dual-boot environment.

Frequently Asked Questions

Why does Windows Boot Manager keep reappearing at the top?

This occurs because Windows updates or certain motherboard firmware defaults prioritize the Microsoft GUID. Additionally, enabling Fast Startup in Windows can lock the boot configuration. Disabling Fast Startup and manually setting the priority in BIOS usually resolves this permanently.

Can I fix this without entering the BIOS?

No, boot order is controlled by the UEFI firmware, which cannot be changed from within the operating systems. You must access the BIOS/UEFI settings via F2/Del or the Windows Advanced Startup menu to rearrange the boot entries.

What if I don't see the Ubuntu or Pop OS entry in BIOS?

If the entry is missing, your system may be in Legacy/CSM mode while Pop OS was installed in UEFI mode, or vice versa. Check the boot mode in BIOS and ensure both OS installations use the same method. Refer to guides on recovering lost bootloaders if the partition is intact but not listed.

Does Secure Boot affect the boot order?

Secure Boot itself does not determine order, but it can hide unsigned bootloaders. Since Pop OS uses signed kernels, Secure Boot should work fine. However, if GRUB is not appearing, temporarily disabling Secure Boot can help diagnose if signature verification is causing the firmware to skip the entry.

Will resetting BIOS clear my custom boot order?

Loading default settings in BIOS will reset the boot order to factory defaults, likely putting Windows back on top. You will need to re-enter the BIOS and manually reorder the entries after any major BIOS update or CMOS reset.

Latest News

How to Display Output of xterm Command in Terminal Screen using Cron

Resolve the inability to display xterm output in a terminal screen from cron by redirecting logs or using wall instead of insecure X11 workarounds.

Read More
Expose Local Server on VPS Preserving Real Client IPs (OS Level)

Resolve VPS logging showing only gateway IPs by configuring reverse proxies to forward real client addresses via X-Forwarded-For headers.

Read More
How to Clear Recent Files History in Linux without Deleting Actual Files?

Clear recent files history in Linux by deleting ~/.local/share/recently-used.xbel without removing the actual files.

Read More
Best HDD Copy Strategy: Manually Syncing and Rewriting Scratch

Resolve data drift between two 4TB hard drives by using rsync with the --delete flag to manually sync and rewrite scratch data for an exact mirror.

Read More
Understanding Bash Prompt Abbreviations: An Overview

Resolve repetitive typing errors by creating and persisting Bash aliases in the .bashrc file for improved command-line efficiency.

Read More
Free Tools and Methods to Log Real-Time Performance Details in Task Manager

Log real-time CPU and memory metrics to CSV files using Windows Performance Monitor Data Collector Sets to troubleshoot system slowness.

Read More
Contact Qatar Airways Customer Service: Phone Number, Help Center, and More

Resolve urgent Qatar Airways reservation issues like flight changes and baggage claims using the US phone number +1801-855-5905 or online self-service tools.

Read More
Windows 11: Alt Codes Displaying Wrong Characters - Solutions

Resolve Windows 11 Alt codes showing wrong characters by verifying the US keyboard layout and enabling Num Lock.

Read More
Run Programs with Elevated Privileges: A Comprehensive Guide

Eliminates the need to type sudo for frequent administrative tasks by configuring .bashrc aliases or functions.

Read More
Dynamically Changing Dates in Excel Formulas Using Cells

Eliminate manual date updates in Excel by using cell references to create dynamic formulas that automatically adjust calculations when input dates change.

Read More
Granting Edit Access to a Specific Excel Sheet in an Office 365 User Email ID-Based Login

Excel Online lacks native sheet-level permissions, so users must split workbooks or use worksheet protection to isolate edit access for specific tabs.

Read More
Creating Network Load on Local Wi-Fi from One PC

Generate sustained Wi-Fi bandwidth load from a single PC using a VM SFTP server to test router stability and throughput.

Read More
Changing the Default Editor for Batch Files in Windows 11's File Explorer

Resolve the issue of batch files opening in Notepad by changing the default editor to a preferred application like VS Code.

Read More
Gain WiFi Connection Minutes Before Losing it by Changing MAC Address

Bypass MAC address filtering to restore WiFi connectivity temporarily when a device is blocked by network administrators.

Read More
Photos Folders Turned Black: Troubleshooting Picture Applications on Windows

Resolve black screens in Windows Photos by resetting the app, updating graphics drivers, and repairing system files.

Read More
Troubleshooting High CPU Temperature Values: A Step-by-Step Guide

Resolve high CPU temperatures and thermal throttling by monitoring with Speedfan, cleaning dust from cooling components, and replacing degraded thermal paste.

Read More
Make cURL establish TLS connection with CA unknown

Resolve cURL TLS connection failures with unknown or self-signed certificates by using the --insecure flag to bypass CA validation.

Read More
Troubleshooting Incorrect Network Metrics Values in Grafana, Prometheus, InfluxDB, and Telegraf

Fix incorrect network metrics in Grafana, Prometheus, InfluxDB, and Telegraf by verifying interface selection, resolving unit mismatches, and handling counter resets.

Read More
Start Another Terminal Window (cmd.exe) Windows Repair/Troubleshoot

Provides step-by-step instructions to access the Windows Command Prompt via bootable media for advanced system repair and troubleshooting.

Read More
Thinkpad P1 Gen 6: Sudden Thunderbolt 3 Dock USB-C Charging Stopped Working

Resolve sudden Thunderbolt 3 dock USB-C charging and internet failure on ThinkPad P1 Gen 6 by updating firmware, resetting the dock, and adjusting power settings.

Read More
ASUS Windows 11 Laptop: Internet Connection Issue with Hotspot

Resolve ASUS Windows 11 laptop spinning wheel issue when connecting to mobile hotspot by resetting network stack, disabling IPv6, and adjusting power settings.

Read More
Developing iOS Project with Firebase: Logging in and Sending Push Notifications

Integrates Firebase to enable secure user authentication and push notifications in iOS applications.

Read More
Troubleshooting Bash Script with Suspected Issues of Spaces, Dashes, Filenames and Quoting

Resolve Bash script failures caused by word splitting, globbing, and special characters in filenames by applying proper quoting techniques.

Read More
Populating OneDrive Folder for Local Backup without Affecting Remote Files

Prevent OneDrive from deleting remote files during Windows reinstallation by unlinking the account or using symbolic links to isolate local data.

Read More
Force First Frame as Keyframe Without Re-encoding: A Quick Solution

Resolve inaccurate seeking and playback glitches by re-encoding video to ensure the first frame is a valid keyframe.

Read More
Find Information in Database Using WSL (Ubuntu) on Windows-10

Resolve database connection issues from WSL Ubuntu on Windows 10 by configuring client tools and network access to query remote or local servers.

Read More
Configuring a New Router with Different Networks: One Family, One Guest

Resolve IP conflicts and isolate guest traffic by configuring a second router with a distinct subnet via its WAN port.

Read More
Quickly Open Multiple Stock Websites with a Single Command

Solve the problem of manually opening multiple stock research websites by creating a single command to launch them simultaneously on Windows, macOS, or Linux.

Read More
Improved Adobe Acrobat Search Experience: Access Advanced Search with Ease

Access advanced search filters like case sensitivity and regex in Adobe Acrobat by clicking More Options in the Find bar.

Read More
Port Forwarding VM via OpenVPN: A Comprehensive Guide

Configure OpenVPN server and iptables to forward specific ports from VPN clients to a virtual machine's internal IP address.

Read More
Understanding Partitions in the 1980s: A Look Back at MS-DOS and Master Boot Record

Explains how the Master Boot Record and partition table enabled MS-DOS to manage multiple disk volumes on a single physical drive.

Read More
Windows 10 Enterprise: Keyboard Not Detected in Managed Organization with Admin Privileges

Resolve Windows 10 Enterprise keyboard detection failures caused by Group Policy restrictions, driver corruption, or USB enumeration errors.

Read More
Can't Find x86_64 Versions of Applications on MacOS arm64 (M1)

Resolve missing x86_64 app issues on M1 Macs by installing Rosetta 2 and reinstalling apps as universal binaries.

Read More
How to Hide Installation Source for an Android App

Manage Android app installation source visibility by using USB transfers or file managers to reduce browser traces and isolate data via work profiles.

Read More
Connecting Momentus 4200.2 ST9808210A Hard Drive via USB Cable

Resolve inability to access Seagate Momentus 4200.2 ST9808210A hard drive by connecting it via USB using a compatible SATA-to-USB adapter and configuring the disk in Windows.

Read More